Date: 5-7 July 2022 in Maastricht (details location)
Organizers: Nhung Pham, Susan Steinbusch-Coort, Martina Summer-Kutmon
In this 3-day workshop, you will learn about molecular pathway curation, pathway and network analysis, and how to automate such an analysis in R to increase reproducibility. We would like to bring together researchers in the COVID-19 field to learn together, exchange ideas and discuss results. The course is a continuous program and builds on each other but it is possible to join only on specific days if needed.
| Date | Time | Title | Presenter | Link |
|---|---|---|---|---|
| 5 July 2022 | 10:00-10:15 | Welcome | Nhung Pham | slides |
| 10:15-11:00 | Pathway Resources | Susan Coort | slides | |
| 11:00-12:00 | Hands-on pathway curation | Nhung Pham | slides | |
| 12:00-13:00 | Lunch | |||
| 13:00-16:00 | Draw your own pathway | Nhung Pham | pathway list | |
| 16:00-17:00 | Discussion: Importance of curation | Martina Kutmon | ||
| 17:30-22:30 | Social Event & Dinner | |||
| 6 July 2022 | 10:00-12:00 | Introduction to Cytoscape | Martina Kutmon | Info/Material |
| 12:00-13:00 | Lunch | |||
| 13:00-14:30 | Pathway analysis | Martina Kutmon | Info/Material | |
| 14:30-14:45 | Break | |||
| 14:45-16:30 | Network analysis | Martina Kutmon | Info/Material | |
| 16:30-17:00 | Q&A | |||
| 7 July 2022 | 10:00-12:00 | Automation in R | Martina Kutmon | Info/Material |
| 12:00-13:00 | Lunch | |||
| 13:00-16:00 | Bring your own data / Practice | Example Dataset | ||
| 16:00-17:00 | Q&A - evaluation - closing |
On day 2 and 3 of the workshop, we will use a transcriptomics dataset as an example. More information about the dataset can be found here.
If you have any questions, send us an email or submit an issue in the issue tracker and we will get back to you as soon as possible.
The workshop is sponsored by the ZonMW COVID-19 grant (#10430012010015).